Module phc.easy.summary.options.item_counts

Classes

class SummaryClinicalType (value, names=None, *, module=None, qualname=None, type=None, start=1)

An enumeration.

Expand source code

class SummaryClinicalType(str, Enum):
    OBSERVATION = "observation"
    CONDITION = "condition"
    MEDICATION = "medication"
    PROCEDURE = "procedure"
    MEDIA = "media"
    DEMOGRAPHIC = "demographic"

    # NOTE: Patient is not included because it's just a count
    # PATIENT = "patient"

    @classmethod
    def has_value(cls, value):
        return any(value == item.value for item in cls)

Ancestors

• builtins.str
• enum.Enum

Class variables

var CONDITION

var DEMOGRAPHIC

var MEDIA

var MEDICATION

var OBSERVATION

var PROCEDURE

Static methods

def has_value(value)

Expand source code

@classmethod
def has_value(cls, value):
    return any(value == item.value for item in cls)

class SummaryItemCountsOptions (**data: Any)

Create a new model by parsing and validating input data from keyword arguments.

Raises ValidationError if the input data cannot be parsed to form a valid model.

Expand source code

class SummaryItemCountsOptions(SummaryClinicalCountsOptions):
    summary: Union[SummaryClinicalType, SummaryOmicsType]

Ancestors

• SummaryClinicalCountsOptions
• PagingApiOptions
• pydantic.main.BaseModel
• pydantic.utils.Representation

Class variables

var summary : Union[SummaryOmicsType, SummaryClinicalType]

Methods

def dict(self)

Inherited from: SummaryClinicalCountsOptions.dict

Generate a dictionary representation of the model, optionally specifying which fields to include or exclude.

class SummaryOmicsType (value, names=None, *, module=None, qualname=None, type=None, start=1)

An enumeration.

Expand source code

class SummaryOmicsType(str, Enum):
    TEST = "test"
    SEQUENCE = "sequence"
    GENE_VARIANT = "gene-variant"
    COPY_NUMBER_STATUS = "copynumber-status"
    CLINVAR_SIG = "clinvar-significance"
    ONCOPRINT = "oncoprint"

    @classmethod
    def has_value(cls, value):
        return any(value == item.value for item in cls)

Ancestors

• builtins.str
• enum.Enum

Class variables

var CLINVAR_SIG

var COPY_NUMBER_STATUS

var GENE_VARIANT

var ONCOPRINT

var SEQUENCE

var TEST

Static methods

def has_value(value)

Expand source code

@classmethod
def has_value(cls, value):
    return any(value == item.value for item in cls)