Module phc.easy.option
Expand source code
from phc.easy.ocr.options.ocr_config_types import Config as OcrConfig
from phc.easy.omics.options.chromosome import Chromosome
from phc.easy.omics.options.clinvar_review import ClinVarReview
from phc.easy.omics.options.clinvar_significance import ClinVarSignificance
from phc.easy.omics.options.coding_effect import CodingEffect
from phc.easy.omics.options.common import GenomicVariantInclude
from phc.easy.omics.options.copy_number_status import CopyNumberStatus
from phc.easy.omics.options.gene_class import GeneClass
from phc.easy.omics.options.genomic_copy_number_variant import (
GenomicCopyNumberVariantOptions,
)
from phc.easy.omics.options.genomic_short_variant import (
GenomicShortVariantOptions,
)
from phc.easy.omics.options.genomic_test import (
GenomicTestStatus,
GenomicTestType,
)
from phc.easy.omics.options.in_frame import InFrame
from phc.easy.omics.options.structural_type import StructuralType
from phc.easy.omics.options.zygosity import Zygosity
from phc.easy.summary.options.clinical_counts import (
SummaryClinicalCountsOptions,
)
from phc.easy.summary.options.item_counts import (
SummaryClinicalType,
SummaryItemCountsOptions,
SummaryOmicsType,
)
class Option:
"""Class that references all available API options"""
# Omics
GenomicVariantInclude = GenomicVariantInclude
GenomicCopyNumberVariantOptions = GenomicCopyNumberVariantOptions
GenomicShortVariantOptions = GenomicShortVariantOptions
GenomicTestType = GenomicTestType
GenomicTestStatus = GenomicTestStatus
CodingEffect = CodingEffect
Chromosome = Chromosome
ClinVarSignificance = ClinVarSignificance
ClinVarReview = ClinVarReview
GeneClass = GeneClass
Zygosity = Zygosity
CopyNumberStatus = CopyNumberStatus
InFrame = InFrame
StructuralType = StructuralType
# OCR
OcrConfig = OcrConfig
# Summary APIs
SummaryItemCountsOptions = SummaryItemCountsOptions
SummaryOmicsType = SummaryOmicsType
SummaryClinicalType = SummaryClinicalType
SummaryClinicalCountsOptions = SummaryClinicalCountsOptions
Classes
class Option
-
Class that references all available API options
Expand source code
class Option: """Class that references all available API options""" # Omics GenomicVariantInclude = GenomicVariantInclude GenomicCopyNumberVariantOptions = GenomicCopyNumberVariantOptions GenomicShortVariantOptions = GenomicShortVariantOptions GenomicTestType = GenomicTestType GenomicTestStatus = GenomicTestStatus CodingEffect = CodingEffect Chromosome = Chromosome ClinVarSignificance = ClinVarSignificance ClinVarReview = ClinVarReview GeneClass = GeneClass Zygosity = Zygosity CopyNumberStatus = CopyNumberStatus InFrame = InFrame StructuralType = StructuralType # OCR OcrConfig = OcrConfig # Summary APIs SummaryItemCountsOptions = SummaryItemCountsOptions SummaryOmicsType = SummaryOmicsType SummaryClinicalType = SummaryClinicalType SummaryClinicalCountsOptions = SummaryClinicalCountsOptions
Class variables
var Chromosome
-
An enumeration.
var ClinVarReview
-
An enumeration.
var ClinVarSignificance
-
An enumeration.
var CodingEffect
-
An enumeration.
var CopyNumberStatus
-
An enumeration.
var GeneClass
-
An enumeration.
var GenomicCopyNumberVariantOptions
-
Options to pass to
/v1/genomics/copy-numbers
var GenomicShortVariantOptions
-
Options to pass to
/v1/genomics/variants
var GenomicTestStatus
-
An enumeration.
var GenomicTestType
-
An enumeration.
var GenomicVariantInclude
-
An enumeration.
var InFrame
-
An enumeration.
var OcrConfig
var StructuralType
-
An enumeration.
var SummaryClinicalCountsOptions
var SummaryClinicalType
-
An enumeration.
var SummaryItemCountsOptions
var SummaryOmicsType
-
An enumeration.
var Zygosity
-
An enumeration.